Ecommerce integration software simplifies online business operations by connecting systems like marketplaces, ecommerce platforms, payment gateways, shipping providers, and inventory tools, improving efficiency and customer experience. As of December 2024, there are 26,898,844 ecommerce stores online, showcasing the massive scale and competition within the industry.
To stay ahead of their competitors, businesses need tools that offer more than basic functionality. Ecommerce integration platforms thus provide multi-channel selling, real-time inventory syncing, and advanced analytics to streamline workflows and enhance personalized shopping experiences.
This article highlights some of the best ecommerce integration options to help businesses thrive in this dynamic environment.
When selecting the best ecommerce integration software, several things must be considered to ensure that the solution aligns with your business needs, scalability, and efficiency. Here are some key features to look for:
Many businesses struggle with the inefficiency and complexity of managing disconnected systems. Compatibility ensures that the integration software works seamlessly with your existing ecommerce platforms (e.g., Shopify, WooCommerce, Magento, BigCommerce), Customer Relationship Management (CRM), Enterprise Resource Planning (ERP), payment gateways, and shipping providers.
A retailer using Shopify for their online store and QuickBooks for accounting can use integration software to transfer sales data into QuickBooks automatically. This eliminates the need for manual entry, reduces errors, and saves time.
Manual processes, such as order processing, inventory updates, and customer notifications, can lead to delays, errors, and inefficiencies. Automation eliminates repetitive tasks, saving time and reducing the risk of human error.
Businesses implementing automation in ecommerce see an up to 50% reduction in order processing time. This ensures faster operations, improved accuracy, and a better customer experience, allowing businesses to focus on growth and innovation.
Growing businesses often face limitations with software that cannot handle increased traffic, transactions, or product catalogs. Scalability ensures the software adapts to your business growth without performance issues.
A small business transitioning to a medium-sized enterprise can use scalable integration software to handle a surge in orders during peak seasons, such as holiday sales, without system crashes or slowdowns.
Data discrepancies, such as mismatched inventory levels or outdated order statuses, can lead to customer dissatisfaction and lost sales. Real-time synchronization keeps data consistent across all platforms.
A business selling on multiple channels, like Amazon and eBay, can use real-time synchronization to update inventory levels instantly. This prevents overselling or underselling.
Name |
Features |
Pricing |
Webgility |
- Multichannel selling (Shopify, WooCommerce, Magento, etc.) - Accounting automation with QuickBooks - Real-time inventory management - Comprehensive analytics - Shipping integrations |
Starts at $59/month Annual plans: - $49 Basic (Online) - $99 Pro (Online) - $109 Plus (Desktop) - $199 Advanced (Desktop) - $399 Premium (Desktop) |
A2X |
- Integrates with Amazon, Shopify, eBay, and Etsy - Automates sales data reconciliation - Generates detailed financial reports |
Starts at $29/month (no annual discount) Plans (Shopify): - $29 Mini (200 orders), - $45 Basic (500 orders), - $79 Professional (1,000 orders) - $115 Premium (5K orders) |
Synder |
- Connects with over 10 ecommerce/payment platforms - Syncs transactions into QuickBooks and Xero - Multi-currency support - Financial insights |
Starts at $65/month Annual plans: - $52 Medium (500 orders) - $92 Scale (1K orders),\ - $220 Large (10K orders) |
MyWorks |
- Syncs orders, sales, and statuses - Advanced mapping for customers, products, and payments - Multi-currency support - Shopify & WooCommerce integration |
Free Launch plan (up to 20 orders/month) Monthly - $24 Rise (60 orders) - $55 Grow (300 orders), - $99 Scale (1K orders), - $119 Soar (unlimited orders) |
Finaloop |
- Automates income, expenses, inventory, and COGS tracking - Tax-ready reports - Multi-currency support - Real-time financial insights |
Starts at $155/month for businesses with up to $500k revenue |
Dext |
- Automates data extraction from receipts and invoices - Integrates with QuickBooks, Xero, Sage - Converts data for easy reporting |
- $19/month (Starter - 200 orders) - $59/month (Growth - 1,000 orders) |
Choosing the right ecommerce integration software is crucial for streamlining business operations, enhancing customer experience, and driving growth. With so many options available, selecting the best one can be overwhelming.
To help you make an informed decision, we’ve carefully evaluated and compiled a list of the 7 best ecommerce integration software tools.
Webgility is a leading ecommerce integration software. It is designed to streamline online selling and automate accounting processes, particularly for users of QuickBooks Online & Desktop.
In other words, the platform connects various ecommerce channels, including popular marketplaces like Amazon and eBay, to QuickBooks. In doing this, it enables businesses to manage their sales, inventory, and financial data from a single interface.
Its unique selling point lies in its seamless integration of ecommerce, accounting, and inventory management functions. Unlike standalone ecommerce tools or accounting software, Webgility offers an all-in-one solution, simplifying backend operations.
“Webgility is an effortless software to operate. Its features are a boon, mainly when importing orders from multiple marketplaces into Quickbooks. The most significant advantage is that it eliminates the need for manual invoice entry. Customer support is unparalleled and is always available to answer queries or concerns. Additionally, the program can be customized to align with your personal preferences. If you sell packs on Amazon, this tool streamlines invoicing. We use this daily to import orders into invoices, saving us much time. —Griselda G., business owner (Source: G2) The Webgility interface is very straightforward and intuitive. Faizan [the customer service rep] did a fantastic job of assisting us with onboarding training. Faizan went over the following: Accounting Workflows, Workflows (manual + automated), Order downloads, Posting transactions to your accounting system, Expenses & Fees, Inventory, Syncing item quantities and prices (manual + automated), Handling multiple inventory locations, Features to minimize overselling. Coming from the "Connex for Quickbooks" application, WEBGILITY is much better overall—including PRICING. —Joseph S., small business owner (Source: G2) |
Webgility offers tiered subscription packages tailored to different business needs:
i) Pricing starts at $59/monthA2X is a leading ecommerce integration software for sellers primarily on marketplaces such as Amazon, eBay, and Etsy, as well as Shopify. It automates the reconciliation of sales data with accounting systems such as QuickBooks and Xero, transforming uncategorized transaction data into organized summaries that facilitate accurate bookkeeping.
Pricing starts at $29/month (no annual discount)
Plans (Shopify):
Synder is an accounting automation tool for retailers, SaaS companies, and accountants. It integrates with QuickBooks, Xero, and Sage Intact, offering lightweight accounting, reconciliation, and analytics for Stripe. Synder simplifies ecommerce accounting by automatically syncing transactions, reconciling data, and generating reports across multiple sales channels.
It supports numerous integrations, including payment gateways, and is trusted by companies like Decimal, Totally Booked, and Syndic8. Ideal for small merchants, retailers, brands, and SaaS businesses.
Starts at $65/month.
Annual pricing:
MyWorks is an integration software designed to automate accounting for ecommerce businesses by syncing data between online store Shopify and accounting platforms. Embedded directly in the Shopify admin, it offers a seamless connection but supports only this single store.
It primarily integrates with Shopify and WooCommerce, serving small ecommerce sellers like Haley Nutrition and Hazmat Resource.
Monthly pricing plans
Finaloop is an ecommerce integration software designed to simplify financial management for online sellers. It streamlines bookkeeping and accounting by seamlessly connecting your ecommerce platforms like Shopify, Amazon, and Walmart, as well as payment processors and banks.
Tailored for small to mid-sized businesses, Finaloop automates data entry, reconciliations, and tax reporting, allowing you to focus on growth.
Pricing starts at $65/month for businesses with gross revenue of $96k.
Dext is another ecommerce integration platform for small businesses and ecommerce stores. It helps manage and streamline financial data collection, particularly receipts, invoices, and transactions.
Choosing the right ecommerce integration software is crucial for aligning with your business’s specific needs, scale, and goals. Tools like Webgility, A2X, and Synder provide seamless integration with multiple platforms, automate accounting tasks, and optimize inventory management, all of which enhance efficiency and minimize errors.
For businesses focused on growth, scalability and real-time synchronization are essential features. Webgility, with its all-in-one approach, stands out as an ideal solution for those seeking a comprehensive integration system. Schedule a demo today to take your business to the next level.
Ecommerce integration refers to connecting various systems, such as online stores, accounting systems, and back-end applications like ERP and CRM, to facilitate seamless data exchange. This integration allows businesses to synchronize inventory, manage orders, and streamline operations, ensuring data flows smoothly across platforms. Automating these processes, ecommerce integration enhances efficiency, reduces manual entry errors, and improves customer experiences.
How can I build a business case to justify investing in ecommerce integration software?
To make a strong business case, quantify the potential time and cost savings from automation. Use case studies or vendor-provided ROI calculators to showcase tangible benefits that align with your business’s growth goals. For example, you can use our ROI calculator to estimate ROI against accountant costs, lost selling opportunities due to inventory management issues, and so on. You can also demonstrate how real-time inventory synchronization can reduce stockouts or overselling, directly impacting customer satisfaction. Include metrics on scalability, like the ability to handle peak season surges without additional staffing.