7 Best Synder Alternatives for Ecommerce Accounting Automation in 2025

Approximately 64% of business owners manage their accounting, which is done with the help of accounting automation tools. These tools help streamline and enhance financial management.

Synder is a tool that many eCommerce retailers are looking to manage their accounting, but as businesses expand, they may find that it has some limitations. These include limited customization, difficulty handling complex multi-channel operations, and trouble integrating with specific platforms.

Choosing the right accounting automation software is crucial. Businesses need tools that automate tasks, support long-term growth, handle more transactions, work with new platforms, and provide strong reporting features.

This article looks at the best Synder alternatives for eCommerce accounting, offering options that fit businesses’ needs as they scale.

Overview: comparing Synder with our top alternatives

Key features to look when choosing ecommerce accounting automation

When evaluating automation for accounting processes, it’s essential to pinpoint key features that improve efficiency, accuracy, and user experience. Here are crucial features to prioritize in accounting automation software:

• Integration with ecommerce platforms: Ensure the software integrates seamlessly with your ecommerce platforms, such as Shopify, WooCommerce, BigCommerce, or Amazon. It should be able to sync sales, inventory, and transaction data from your online store.
• Automated financial reports: The system should generate essential financial reports, such as profit and loss statements, balance sheets, tax reports, and cash flow statements.
• Tax compliance and automation: It should handle tax calculations based on local, state, and international requirements. Automatic updates for tax rates and handling complex tax scenarios (e.g., VAT, sales tax) are crucial for ecommerce businesses operating across different regions.
• Inventory management: The software should integrate with your inventory system, enabling real-time tracking of stock levels and automatic updates of COGS (Cost of Goods Sold). It should support multiple warehouses and locations, if applicable.
• Multi-currency support: If you sell internationally, the software should handle multiple currencies and languages, adjust financial data based on the correct exchange rates, and generate reports in the relevant currency or language.
• Bank reconciliation: The software should automate the reconciliation of sales transactions, payments, and bank statements, ensuring that your accounts are always up to date. This includes handling payment processors like PayPal, and Stripe.
• Expense tracking: Automate the tracking of business expenses, including shipping costs, payment processing fees, supplier invoices, and other operational costs. Categorize and track expenses for better profitability analysis.
• Scalability: As your business grows, the accounting software should be able to scale with your company, handling increasing transactions, multiple sales channels, and more complex financial data.

Best Synder alternatives for ecommerce accounting automation

These tools streamline financial workflows and enhance accuracy, helping businesses manage transactions, taxes, and reports quickly and efficiently.

1. Webgility

Webgility is our first Synder alternative ecommerce automation platform that connects your ecommerce apps with accounting software like QuickBooks Online and Desktop. It integrates with over 50 sales channels and marketplaces, including Shopify, Amazon, eBay, and BigCommerce, making it easier to expand your business.

The platform automates data syncing for shipping, inventory, pricing, and more, reducing errors and manual entry. This ensures accurate bookkeeping, tracks cash flow, calculates profitability, and simplifies tax management across jurisdictions, helping businesses streamline operations and boost sales.

Why choose Webgility over Synder?

Synder is limited in terms of scalability, integration capabilities, and advanced automation and AI features. In Synder’s defense, it packs enough features to empower its small businesses.

However, as your books become bigger due to more sales channels, order volumes and SKUs, a scalable solution like Webgility is more apt for your business.

Webgility key features

• Real-time accounting sync: Transactions are recorded in real-time, enabling businesses to keep their books current and close monthly accounts quickly.
• Real-time inventory sync: Webgility helps prevent overselling by synchronizing inventory levels across all sales channels, ensuring that stock levels are accurately reflected.
• Simplified tax data: The platform collects and organizes sales tax data by jurisdiction, simplifying tax compliance for businesses operating in multiple regions.
• Reporting: You can generate detailed reports on revenue, expenses, cash flow, and profitability, which can help them make informed business decisions.
• Free onboarding and support: Webgility offers free onboarding and expert service for all of our customers.

Testimonials

Pros 

• Provides insights through detailed sales and performance reports.
• Integrates with platforms like Shopify, Amazon, and eBay for seamless operations.
• Simplifies accounting, inventory, and order management by automating processes.

Cons

• Requires training to use advanced features fully.

Pricing

Pricing starts at $59/month or $49/month- annually.  

Annual pricing:

• $49 Basic (Online)
• $99 Pro (Online)
• $109 Plus (Desktop)
• $199 Advanced (Desktop)
• $399 Premium (Desktop)

2. MyWorks Sync

MyWorks Sync is an alternative to Synder that integrates with ecommerce platforms like Shopify and WooCommerce and accounting software like QuickBooks Online, QuickBooks Desktop, and Xero. 

This integration allows for accurate two-way, real-time data synchronization and ensures that orders, invoices, customers, products, and inventory are updated across all platforms simultaneously.

Why choose MyWorks Sync over Synder

MyWorks Sync is preferred over Synder for its user-friendly interface and event-driven syncing, which ensures real-time updates without manual intervention. It offers 24/7 customer support and a free version, making it accessible for small businesses.

Key features

• MyWorks Sync ensures that taxes like Value Added Taxes are automatically recorded and applied according to local regulations.
• The system can synchronize inventory levels and order data across multiple sales channels, helping businesses maintain accurate stock and sales records across different platforms.
• MyWorks Sync can handle multiple currencies, making it ideal for global businesses that operate in various markets. 
• It offers comprehensive reporting capabilities, providing detailed insights into sales performance, profit margins, taxes, etc.

Pros 

• Users can set sync intervals and toggle syncing on/off, offering flexibility.
• Automates syncing of orders, payments, and customer data, reducing manual bookkeeping effort.

Cons

• Initial setup may be challenging, but resources are available to assist users.

Pricing

• Offers a free launch plan for up to 20 orders per month.

Monthly pricing plans

• $24 Rise - 60 orders, basic sync
• $55 Grow - 300 orders, includes refunds, custom field mapping
• $99 Scale - 1K orders, priority support, historical data
• $119 Soar - Unlimited orders, same features as Scale

3. A2X

A2X is another Synder alternative for automating eCommerce accounting. It streamlines the bookkeeping process by transforming complex payout data into organized summaries and reconciling them seamlessly with popular accounting software such as Xero and QuickBooks. 

Why choose A2X over Synder

A2X focuses on accurate financial data reconciliation, providing summarized entries that match payouts directly. It offers advanced tax tracking and customizable features for multi-channel sales.

A2X key features

• It automates the categorization of sales, refunds, fees, and taxes, reducing manual data entry and errors.
• A2X generates detailed journal entries and breaks down fees for easier reconciliation.
• It supports global eCommerce, handling multi-currency transactions and multiple sales channels.
• A2X ensures that transactions match the accounting system, bank account, and marketplace.
• It offers customizable financial reports to help track business performance and ensure tax compliance.

Pros 

• Supports multiple eCommerce platforms
• Enables accurate and advanced financial reporting
• A2X is user-friendly, especially for those familiar with accounting software

Cons

• Problems with tax mappings and missing jurisdictions.

Pricing

Pricing starts at $29/month (no annual discount)

Plans (Shopify):

• $29  Mini- 200 orders | 1 store
• $45 Basic - 500 orders | 1 store
• $79 Professional - 1,000 orders | 1 store
• $115 Premium - 5K orders | 5 stores

4. Bookkeep

Bookkeep is an accounting automation app designed to streamline sales and payment data management for businesses such as eCommerce, cannabis, restaurants, franchises, and accounting firms.

Why choose Bookkeep over Synder

Bookkeep offers superior automation and accuracy for bookkeeping tasks compared to Synder. Its focus on ecommerce integration allows for seamless syncing of financial data, which minimizes errors and manual entries. Additionally, Bookkeep provides robust customer support and tailored solutions for diverse business needs.

Bookkeep key features 

• Bookkeep integrates with over 60 major eCommerce platforms such as Shopify, Amazon, Square, PayPal, and WooCommerce, automatically pulling transaction data into accounting software like QuickBooks Online, Xero, or NetSuite.
• It provides precise, automated revenue reporting by reconciling eCommerce sales data with payments deposited into your bank account.
• The software generates precise journal entries that reconcile sales data with payment deposits, ensuring that Profit and Loss statements in accounting software like QuickBooks or Xero reflect actual business performance.
• Integration with Avalara automates sales tax filings for multiple states, simplifying compliance for businesses operating in various jurisdictions.

Pros 

• Promotes accountability, helping to track transactions and detect fraud.
• Provides data for budgeting, investments, and strategy decisions.

Cons

• Business owners without accounting knowledge might struggle with complex financial records.

Pricing 

Pricing starts at $60/month or $50/month - annual plan.

Annual pricing:

• $60 Essential - $1.5M max revenue, 2 channels
• $160Plus - $5M max revenue, 5 channels
• $320 Advanced - $10M max revenue, 10 channels

5. Finaloop

Finaloop is an AI-powered ecommerce accounting platform designed to automate bookkeeping and financial management for online retailers. It integrates seamlessly with ecommerce platforms like Shopify, Amazon, and Walmart, providing real-time financial insights and reconciliation capabilities.

Why choose Finaloop over Synder

Finaloop is a strong choice over Synder for ecommerce businesses due to its intuitive interface and automation capabilities explicitly tailored for smaller direct-to-consumer brands. It offers real-time financial visibility, integrates seamlessly with major platforms, and provides comprehensive bookkeeping, inventory tracking, and tax filing solutions.

Finaloop key features

• Finaloop provides instant access to Profit & Loss statements, Cash Flow reports, and Balance Sheets, ensuring users have up-to-date financial information.
• The platform utilizes an AI reconciliation engine named Rico, which automates the categorization and reconciliation of transactions, significantly reducing manual bookkeeping efforts.
• It includes real-time inventory sync functionality that tracks the Cost of Goods Sold (COGS), helping businesses manage their stock.
• The platform features an intuitive dashboard that consolidates actionable insights, allowing businesses to make informed decisions quickly.

Pros

• It integrates with over 700 applications, including QuickBooks and Stripe.
• Finaloop offers 24/7 customer support and a quick response time.
• It provides real-time financial reporting and advanced analytics.

Cons

• Some users find the onboarding process confusing and challenging.

Pricing

Pricing starts at $65/month for businesses with gross revenue of $96k.

6. Dext

Dext is another Synder alternative for automating accounting and bookkeeping tasks, particularly for small businesses and eCommerce stores. It helps manage and streamline financial data collection, particularly receipts, invoices, and transactions. 

Why choose Dext over Synder

Dext is preferred over Synder for its superior data extraction accuracy of over 99%, significantly reducing manual entry errors. It offers faster processing times, averaging under 30 seconds per document, and provides robust security with bank-level encryption and GDPR compliance.

Key features

• The automatic extraction of relevant data from invoices, receipts, and bills saves considerable time and effort compared to manual data entry.
• Dext can capture receipts and invoices by simply taking photos or uploading them.
• It integrates with popular accounting software like Xero, QuickBooks, and Sage.
• Dext can automatically calculate and categorize taxes, which is especially helpful for international eCommerce businesses that must adhere to varying tax laws.

Pros 

• Streamlines document management by automating data extraction from receipts, invoices, and bank statements.
• Integrates with popular accounting platforms like QuickBooks, Xero, and Sage.

Cons

• Advanced features are limited to higher-tier plans.

Pricing

• $19 per month billed annually  Starter - 200 orders 
• $59 per month billed annually  Growth - 1,000 orders

7. Linnworks

Linnworks is a cloud-based platform designed to automate and manage the entire eCommerce operation, including inventory, order processing, and shipping across multiple sales channels like Amazon, eBay, and Shopify.

This integration allows businesses to maintain real-time visibility of stock levels and streamline order fulfillment processes, significantly reducing manual workload and errors.

Why choose Linnwork over Synder

Linnworks offers advanced multi-channel eCommerce automation, streamlining inventory management, order processing, and reporting across various platforms compared to Synder.

Key features

• It automates the import and management of orders from all connected sales channels, simplifying the order fulfillment process. 
• Linnworks supports automatically creating and synchronizing invoices with accounting software, ensuring accurate financial records without manual input.

Pros 

• Automate order fulfillment, processing, and shipping, reducing manual work 
• Offers robust reporting tools, providing insights into sales trends, stock levels, customer behavior
• Supports integration with various marketplaces and eCommerce platforms like eBay, Amazon, Shopify, and Etsy.

Cons 

• Linnworks can be expensive for small businesses, with its pricing tiers based on sales volume.

Pricing

• $499/month - 2,000 orders/mo
• $849/month - 2,001 -5000 orders/mo
• $1349/month - 5001-10,000 orders/mo

Conclusion

Choosing the right tool can impact your business efficiency and scalability. While Synder, LinnWork, SoS inventory, and others offer valuable features tailored to specific business needs, Webgility is a standout option for multichannel eCommerce businesses. 

Its robust integrations, real-time data syncing, inventory management, and tax compliance capabilities position it as an ideal solution for streamlining financial processes and driving growth. By choosing Webgility, businesses can save time, reduce manual errors, and focus on expanding their sales channels.

Ready to transform your eCommerce accounting process? Try Webgility today and experience the difference!