If you sell online, you know the struggle. Running out of stock means losing sales, but overstocking kills your cash flow. And if you're selling across multiple channels like Shopify, Amazon, and Etsy, keeping inventory accurate feels like a full-time job.
With global ecommerce sales expected to hit $7 trillion in 2025, the competition is fiercer than ever. The right inventory management software ensures you never oversell, prevents costly mistakes, and helps you scale without headaches. In this guide, we’ll cover the seven best inventory management tools to keep your stock in sync and your business growing.
You can't choose the best inventory management software for e-commerce without considering its features.
You’ll need software that syncs with 3PL partners, dropshipping suppliers, and multiple sales channels to know what’s in stock and where it’s stored.
The right features will help optimize your supply chain by giving insights into when to restock and how much you need. Here’s what to focus on:
Your software should keep stock updated across all channels, preventing overselling and stockouts. If you sell a handmade bag on Etsy, the system should automatically update inventory on Shopify. Without this, you risk selling out-of-stock items and disappointing customers.
Your software should be able to consolidate orders from different platforms into one dashboard for easier tracking. Without it, tracking orders across multiple channels will lead you to use different connector apps for each platform, leading to disintegrated data.
Platforms like Webgility automatically sync inventory costs and sales with QuickBooks. This keeps financial records and inventory accurate without manual intervention. Without integration, you’d spend hours reconciling stock levels with revenue reports.
Your platform should help you automate purchase orders when inventory hits a set threshold, avoiding stockouts. If a best-selling candle drops below five units, the system can auto-place an order with suppliers. Without automation, you might forget to restock and lose sales.
Your platform predicts inventory needs based on past sales trends, preventing overstock and shortages. If holiday sales spike every December, the system can suggest ordering more in advance. Without forecasting, you may either overbuy or run out at peak times.
You need to be able to track returned items and update stock accordingly. If a customer returns a dress, the system can mark it as available for resale. Without this, returns create confusion and potential inventory losses.
Automates purchase orders, tracks deliveries and provides supplier insights. If a key supplier has delays, the system flags it so you can find alternatives. Without this, missed restocks can disrupt your supply chain.
Before we dive deep into each tool, here’s a quick review of the best inventory management software for your ecommerce business:
|
Tool Name |
Pricing |
Free Trial Available |
Best Features |
|
Webgility |
Basic: $59/month per sales channel Pro: $119/month per 2 sales channel |
15-day free trial available |
Automated inventory updates, multichannel inventory management, performance and profitability tracking by SKUs |
|
Unicommerce |
Custom pricing |
No free trial available |
Track inventory, automate updates, generate barcodes, replenish stock |
|
Cin7 |
Standard: $349/month per 5 users Pro: $499/month per 10 users Professional: $999/month per 15 users |
14-day free trial available |
Real-time inventory control, POS integration, MRP, product traceability, co-manufacturing |
|
Netstock |
Custom pricing |
No free trial available |
Get AI recommendations, track KPIs, receive alerts, solve issues instantly |
|
Fishbowl Inventory |
Custom pricing |
14-day free trial available |
Order management, inventory tracking, warehouse control, barcode scanning, real-time updates, QuickBooks integration |
|
Zoho Inventory |
Standard: $39/month per 2 users Professional: $99/month per 2 users Premium: $159/month per 2 users Enterprise: $299/month per 7 users |
Fully-featured 14-day free trial available |
Multi-location inventory management, sales orders and invoicing, backorders and drop shipping, barcode scanning, accounting sync, reporting |
|
Shopify |
Basic: $29/month per 10 inventory locations Shopify: $79/month per 10 inventory locations + 5 additional staff accounts Advanced: $299/month per 10 inventory locations + 15 additional staff accounts Plus: Starts at $2,000 per 200 inventory locations + unlimited staff accounts |
3-day free trial available |
Track inventory, view history, generate reports, receive stock alerts, easy setup and management
|
Once you know which features you need, you can start exploring the best ecommerce inventory management software options for your business.
When you’re looking to manage your ecommerce inventory effectively, you need a solution that ensures accuracy and scalability. Webgility is the best ecommerce inventory sync solution for QuickBooks that improves inventory management across multiple sales channels. It seamlessly integrates your sales platforms like Shopify, Amazon, Walmart, eBay, and more with QuickBooks, saving you time and minimizing errors.
You can track stock levels in real-time, automate order processes, manage product listings, and get insightful reports about your business performance. Webgility automates inventory updates, syncs stock levels across multiple channels, and creates purchase orders based on current stock levels, so you never run out of products or oversell.
The software's powerful reporting and performance tracking features give you actionable insights into your sales trends and product profitability, making it an excellent tool for growing your ecommerce business.
What sets Webgility apart from other inventory management systems is its deep integration with QuickBooks and its ability to manage multiple sales channels in one unified system. Its automated features, like order management and inventory syncing, make it ideal for businesses looking to save time and reduce manual errors.
You can also track individual products with unique SKUs across different platforms, solving the issue of managing multiple SKUs for the same product in different stores. For products without barcodes, Webgility allows you to manually track and update your inventory without requiring barcode scanning.
For Webgility’s most recent pricing, check our pricing page.
Here’s what a G2 user said about using Webgility:
Unicommerce is a popular ecommerce enablement SaaS platform that supports end-to-end management of operations for brands, marketplaces, and logistics providers. It offers comprehensive solutions for both pre-purchase and post-purchase stages, improving operational efficiency and driving growth.
As one of the best ecommerce inventory management software, Unicommerce helps businesses track inventory across multiple warehouses, analyze detailed inventory reports, receive instant alerts for low-stock items, and much more. In addition, the platform helps with vendor management, ERP integration, and returns/replacement processes, ensuring your operations run smoothly from start to finish.
Refer to Unicommerce’s pricing page for updated pricing.
Built for manufacturers and product sellers, Cin7 is an excellent choice for small businesses, whether you're a retailer, wholesaler, or online seller. The platform’s Connected Inventory Performance (CIP) connects your entire product lifecycle, from sourcing and production to sales and fulfillment, providing real-time visibility and automating workflows.
With over 700 integrations, including popular platforms like Shopify, Amazon, and QuickBooks, Cin7 allows you to manage your inventory across multiple channels effortlessly.
Cin7’s ForesightAI also helps with demand forecasting, automating reorder processes and minimizing waste. Its advanced reporting tools give you valuable insights into sales trends and inventory costs, allowing you to make data-driven decisions for more efficient business operations.
Check Cin7’s pricing page for updated pricing information.
As a best-of-breed supply and demand planning software, Netstock claims to deploy AI to optimize forecasting, reduce stock-outs, and lower inventory levels by more than 25%. With its intuitive dashboard, you can instantly view key performance indicators like stock vs. model stock, fill rates, and excess stock.
Refer to Netstock’s pricing page for updated pricing.
Fishbowl Inventory provides a real-time, automated inventory management platform that allows you to track inventory by various factors such as quantity, weight, serial number, or expiration date. You can easily scan barcodes, monitor stock levels across locations, and keep track of your assets' availability.
The platform also allows you to manage costing, pricing models, and landed costs in one place. It integrates seamlessly with QuickBooks Online, streamlining the process from quoting a customer to generating sales orders, packing, and shipping.
With its ability to provide detailed reports, Fishbowl helps you make informed decisions while reducing manual entry and errors.
Check out Fishbowl Inventory’s pricing page for more information on pricing.
For businesses looking to manage orders, track inventory, and handle GST billing in India, Zoho Inventory offers a comprehensive solution. It helps businesses of all sizes, from MSMEs to large corporations, keep tabs on stock levels, manage sales and purchase activities, and monitor payments. The software allows you to manage multiple warehouses, track item movements, and transfer items across locations.
Zoho Inventory also integrates with barcode scanners, making it easier to manage SKUs, serial and batch numbers. You can even monitor the expiry dates for your products. Additionally, the software provides various reports that give you insights into inventory aging, vendor payments, sales details, and inventory valuation, which can be easily downloaded or shared.
Refer to Zoho Inventory’s pricing page for updated pricing.
If you're running a store on Shopify, you'll have access to built-in inventory management features included in your monthly plan. You can set up inventory tracking, view your stock levels, and adjust them directly in Shopify’s Inventory area. Shopify also allows you to check the history of any inventory adjustments made to products and variants.
In the Inventory Reports section, you can analyze changes in stock levels to track trends. If you'd like to stay on top of low stock, Shopify offers inventory alert apps in their App Store to notify you when stock is running low.
For their most recent pricing, check Shopify’s pricing page.
Inventory management is crucial for the success of any ecommerce business. Selecting the right software can simplify your processes, saving time and money as your business grows.
The most important part of choosing the right software is that it offers the needed features and can scale as your business expands. Webgility is one such tool that syncs and automates inventory across platforms, giving real-time stock updates and preventing overselling. It also integrates with ecommerce stores, marketplaces, accounting software, and shipping providers, reducing manual work and keeping stock levels accurate.
So, what are you waiting for? Sign up today to get started!
To choose an inventory management system, consider your order volume, number of sales channels, and automation needs. Smaller businesses may benefit from simple, cost-effective tools, while larger operations require advanced forecasting and supplier management.
The most savvy business owners are aware of hidden platform costs: charges for additional users, integrations, or API access, as well as extra fees for high-order volumes. While subscription fees may seem straightforward, these additional costs can add up quickly and impact your bottom line.
You should choose tools with seamless integrations for Shopify, Amazon, Etsy, and third-party logistics. Options like Webgility and Cin7 excel at real-time inventory syncing across multiple platforms.